Bioinformatics: Data, Sequence Analysis and Evolution by Ilene Karsch Mizrachi (auth.), Jonathan M. Keith PhD (eds.)

By Ilene Karsch Mizrachi (auth.), Jonathan M. Keith PhD (eds.)

Not purely is the amount of existence technological know-how facts increasing, yet new varieties of organic facts stay brought due to technological improvement and a turning out to be figuring out of organic platforms. tools for examining those information are an more and more vital component to smooth organic study. In Bioinformatics, major researchers within the box supply a variety of the main beneficial and greatly acceptable equipment, in a position to be utilized as is, or with minor adaptations, to many particular difficulties. Volume I: info, series research and Evolution examines a range of equipment regarding the iteration and association of information, together with series facts, RNA and protein constructions, microarray expression facts and useful annotations, equipment for locating the sensible elements of genomes, whether or not they be genes, replacement splice websites, non-coding RNAs or regulatory motifs, and a number of other of the main fascinating tools in phylogenetics and evolution. As a quantity of the hugely winning Methods in Molecular Biology™ sequence, this paintings offers the type of targeted description and implementation suggestion that's the most important for buying optimum results.

Comprehensive and state of the art, Bioinformatics: quantity I: info, series research and Evolution is a perfect reference for all scientists concerned with the ever-growing array of information within the increasing box of existence science.

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Extra resources for Bioinformatics: Data, Sequence Analysis and Evolution

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The unambiguous identification of hydrogen bonds is important in nucleic acid structure determination, particularly for tertiary structural interactions; in the absence of such direct measurements, hydrogen-bonding partners can be misassigned, which will subsequently impact the precision of the resulting structure. All these recently introduced parameters are especially important for structure determination of RNA due to the low proton density, and because a significant number of protons are potentially involved in exchange processes.

When preparing a submission by Sequin or tbl2asn, information about the sequence can be incorporated into the Definition Line of the fasta formatted sequence. FASTA format is simply the raw sequence preceded by a definition line. The definition line begins with a > sign and is followed immediately Managing Sequence Data 25 by the sequence identifier and a title. Information can be embedded into the title that Sequin and tbl2asn use to construct a submission. Specifically, you can enter organism and strain or clone information in the nucleotide definition line and gene and protein information in the protein definition line using name-value pairs surrounded by square brackets.

Medium-sized RNA molecules. The TAR RNA hairpin loop interacts with Tat, one of the regulatory proteins encoded by HIV. Tat contains an arginine-rich motif responsible for binding to its target (22, 23). Formation of the Tat–TAR interaction is critical for viral replication. Peptides from the basic region of Tat retain the specificity of RNA binding and the amide derivative of arginine also binds specifically to TAR, although with greatly reduced affinity (24, 25). The nucleotides on TAR important for Tat binding are clustered around a three-nucleotide bulge, shown in Fig.

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